.. _topology :

Topology representations
========================

This module provides different topological representations to
translate from external toolkits the different molecular parameters
for PELE.

.. currentmodule:: peleffy.topology

Primary objects
---------------

.. autosummary::
    :nosignatures:
    :template: class.rst
    :toctree: api/autogenerated

    Molecule
    Topology


Secondary objects
-----------------

.. autosummary::
    :nosignatures:
    :template: class.rst
    :toctree: api/autogenerated

    Atom
    Bond
    Angle
    Dihedral
    Proper
    Improper
    elements.DummyAtom
    elements.OFFDihedral
    elements.OFFProper
    elements.OFFImproper
    ZMatrix
    rotamer.Rotamer
    rotamer.RotamerLibrary
    rotamer.MolecularGraph